STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG32324.1TonB-dependent receptor. (1018 aa)    
Predicted Functional Partners:
SHG32292.1
Alpha-1,6-glucosidases, pullulanase-type; Belongs to the glycosyl hydrolase 13 family.
 
     0.937
SHH12274.1
Beta-glucanase, GH16 family.
 
     0.765
SHG86248.1
Na+/melibiose symporter.
  
     0.671
SHH11074.1
Ig-like domain (group 1).
  
 
   0.653
SHH19659.1
Alginate export.
  
     0.639
SHH34921.1
TIGR03545 family protein.
  
     0.593
SHH24334.1
Tryptophan halogenase.
  
     0.591
SHG39540.1
PepSY-associated TM region.
  
     0.582
SHG32260.1
Protein of unknown function.
       0.580
SHF74533.1
TonB family C-terminal domain-containing protein.
  
   0.576
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.