STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG36830.1Biopolymer transport protein ExbB. (177 aa)    
Predicted Functional Partners:
SHG36763.1
Biopolymer transport protein ExbD.
 
 
 0.954
SHG36795.1
Biopolymer transport protein ExbD.
  
 
 0.943
SHG36730.1
TonB family C-terminal domain-containing protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
   0.937
SHG03163.1
Biopolymer transport protein ExbD.
 
 
 0.930
SHH29959.1
Biopolymer transport protein ExbD.
 
 
 0.928
tolR
Biopolymer transport protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.919
SHG19084.1
Outer membrane transport energization protein ExbD.
 
 
 0.911
SHG36700.1
TonB-dependent heme/hemoglobin receptor family protein.
  
  
 0.797
SHG36666.1
Uncharacterized iron-regulated membrane protein.
  
    0.779
SHG17173.1
Lipopolysaccharide export system ATP-binding protein.
  
   
 0.753
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.