Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SHG17202.1 | SHG22713.1 | SAMN05216361_1537 | SAMN05216361_1754 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | PAS domain S-box-containing protein. | 0.761 |
| SHG17202.1 | SHG39000.1 | SAMN05216361_1537 | SAMN05216361_2061 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains. | 0.860 |
| SHG17202.1 | SHG39051.1 | SAMN05216361_1537 | SAMN05216361_2063 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | His Kinase A (phospho-acceptor) domain-containing protein. | 0.402 |
| SHG17202.1 | SHG39098.1 | SAMN05216361_1537 | SAMN05216361_2065 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Signal transduction histidine kinase. | 0.568 |
| SHG17202.1 | SHG41175.1 | SAMN05216361_1537 | SAMN05216361_2149 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | ABC-type amino acid transport substrate-binding protein. | 0.627 |
| SHG17202.1 | SHG43833.1 | SAMN05216361_1537 | SAMN05216361_2249 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Signal transduction histidine kinase. | 0.580 |
| SHG17202.1 | SHG45701.1 | SAMN05216361_1537 | SAMN05216361_2307 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Signal transduction histidine kinase. | 0.608 |
| SHG17202.1 | SHG71323.1 | SAMN05216361_1537 | SAMN05216361_2876 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL. | 0.787 |
| SHG17202.1 | SHH34587.1 | SAMN05216361_1537 | SAMN05216361_4336 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Signal transduction histidine kinase. | 0.582 |
| SHG22713.1 | SHG17202.1 | SAMN05216361_1754 | SAMN05216361_1537 | PAS domain S-box-containing protein. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.761 |
| SHG22713.1 | SHG39000.1 | SAMN05216361_1754 | SAMN05216361_2061 | PAS domain S-box-containing protein. | DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains. | 0.877 |
| SHG22713.1 | SHG39051.1 | SAMN05216361_1754 | SAMN05216361_2063 | PAS domain S-box-containing protein. | His Kinase A (phospho-acceptor) domain-containing protein. | 0.997 |
| SHG22713.1 | SHG39073.1 | SAMN05216361_1754 | SAMN05216361_2064 | PAS domain S-box-containing protein. | Two-component system, unclassified family, response regulator. | 0.899 |
| SHG22713.1 | SHG39098.1 | SAMN05216361_1754 | SAMN05216361_2065 | PAS domain S-box-containing protein. | Signal transduction histidine kinase. | 0.999 |
| SHG22713.1 | SHG41175.1 | SAMN05216361_1754 | SAMN05216361_2149 | PAS domain S-box-containing protein. | ABC-type amino acid transport substrate-binding protein. | 0.998 |
| SHG22713.1 | SHG43833.1 | SAMN05216361_1754 | SAMN05216361_2249 | PAS domain S-box-containing protein. | Signal transduction histidine kinase. | 0.999 |
| SHG22713.1 | SHG45701.1 | SAMN05216361_1754 | SAMN05216361_2307 | PAS domain S-box-containing protein. | Signal transduction histidine kinase. | 0.999 |
| SHG22713.1 | SHG71323.1 | SAMN05216361_1754 | SAMN05216361_2876 | PAS domain S-box-containing protein. | Two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL. | 0.976 |
| SHG22713.1 | SHH34587.1 | SAMN05216361_1754 | SAMN05216361_4336 | PAS domain S-box-containing protein. | Signal transduction histidine kinase. | 0.999 |
| SHG39000.1 | SHG17202.1 | SAMN05216361_2061 | SAMN05216361_1537 | DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.860 |
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