STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG39672.1Gallate dioxygenase. (419 aa)    
Predicted Functional Partners:
SHG39748.1
2-pyrone-4,6-dicarboxylate lactonase.
 
  
 0.878
SHG39721.1
2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase.
 
  
 0.850
SHG39778.1
4-oxalmesaconate hydratase.
 
  
 0.849
SHG85124.1
Vanillate O-demethylase monooxygenase subunit.
 
  
 0.802
SHG39826.1
4-hydroxy-4-methyl-2-oxoglutarate aldolase.
 
   
 0.783
SHG39901.1
P-hydroxybenzoate 3-monooxygenase.
 
  
 0.767
SHF80520.1
Vanillate O-demethylase monooxygenase subunit.
 
  
 0.743
SHG39616.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.726
SHG39803.1
4-oxalomesaconate tautomerase.
 
  
 0.725
SHG39848.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.710
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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