STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG41598.1TolB amino-terminal domain-containing protein. (234 aa)    
Predicted Functional Partners:
SHG41622.1
TolB amino-terminal domain-containing protein.
 
    
0.829
SHG41648.1
Hypothetical protein.
      
0.773
SHH17707.1
PilZ domain-containing protein.
  
     0.769
SHH11415.1
TIGR03503 family protein.
  
     0.765
SHG06715.1
Hypothetical protein.
 
   
 0.750
SHH32256.1
TIGR03899 family protein.
  
     0.746
SHG20739.1
Sel1 repeat-containing protein.
  
     0.741
SHG06737.1
Flagellar assembly protein T, C-terminal domain.
 
   
 0.740
SHG70044.1
Protein of unknown function.
  
     0.723
SHF75584.1
Hypothetical protein.
  
     0.717
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.