STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG47813.1acyl-CoA thioesterase-1. (232 aa)    
Predicted Functional Partners:
SHG47748.1
Putative ABC transport system permease protein.
 
     0.911
SHG47779.1
Putative ABC transport system ATP-binding protein.
 
     0.846
SHH40306.1
Hypothetical protein.
   
 0.696
SHH41571.1
Hypothetical protein; Partial gene; manually curated.
   
 0.696
SHF79498.1
Pectate lyase.
    
 0.696
SHG86507.1
alpha-L-rhamnosidase.
   
 0.696
SHG91297.1
Von Willebrand factor type A domain-containing protein.
   
 0.696
SHF86835.1
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
   
  0.686
SHG04272.1
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
   
  0.686
SHG95791.1
Putative thioredoxin.
      0.604
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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