STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG63090.1Capsular polysaccharide transport system permease protein. (260 aa)    
Predicted Functional Partners:
SHG63128.1
Capsular polysaccharide transport system ATP-binding protein.
 
 0.999
SHG63161.1
Capsular polysaccharide transport system permease protein.
 
 
 0.998
SHG63051.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
 
  
 0.981
SHH37616.1
Glycosyltransferase, GT2 family.
 
  
 0.767
SHG09505.1
Glycosyltransferase involved in cell wall bisynthesis.
  
  
 0.719
SHH42253.1
Glycosyltransferase, GT2 family.
 
  
 0.669
SHG09792.1
Polysaccharide export outer membrane protein.
  
  
 0.665
SHG14571.1
Polysaccharide export outer membrane protein.
  
  
 0.665
SHH21068.1
Polysaccharide export outer membrane protein.
  
  
 0.665
SHG05618.1
Hypothetical protein.
 
    0.647
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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