STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG63161.1Capsular polysaccharide transport system permease protein. (372 aa)    
Predicted Functional Partners:
SHG63090.1
Capsular polysaccharide transport system permease protein.
 
 
 0.998
SHG63128.1
Capsular polysaccharide transport system ATP-binding protein.
 
 
 0.998
SHG63051.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
 
  
 0.981
SHG09792.1
Polysaccharide export outer membrane protein.
  
  
 0.692
SHG14571.1
Polysaccharide export outer membrane protein.
  
  
 0.692
SHH21068.1
Polysaccharide export outer membrane protein.
  
  
 0.692
SHG64368.1
Uncharacterised nucleotidyltransferase.
  
  
 0.659
SHG41453.1
Pilus assembly protein FimV.
  
    0.624
SHH18167.1
Uncharacterized conserved protein YjbJ, UPF0337 family; Belongs to the UPF0337 (CsbD) family.
   
    0.535
SHG87113.1
Putative membrane protein.
  
     0.530
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.