STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG63198.1Proton-dependent oligopeptide transporter, POT family. (509 aa)    
Predicted Functional Partners:
SHG63236.1
Hypothetical protein.
       0.542
SHG63271.1
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
       0.542
SHG63161.1
Capsular polysaccharide transport system permease protein.
       0.463
SHG10661.1
Aminopeptidase N.
  
 
 
 0.457
SHG63051.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
       0.452
SHG63090.1
Capsular polysaccharide transport system permease protein.
       0.452
SHG63128.1
Capsular polysaccharide transport system ATP-binding protein.
       0.452
SHH09665.1
Peptidyl-dipeptidase A.
 
   
 0.446
SHG04136.1
Putative endopeptidase.
 
   
 0.424
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.