STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG67265.1Pilus retraction ATPase PilT. (346 aa)    
Predicted Functional Partners:
SHG11950.1
Leader peptidase (prepilin peptidase) / N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.859
SHG93390.1
Type IV pilus assembly protein PilM.
 
   
 0.835
SHG67232.1
Twitching motility protein PilU.
 
  
0.831
SHF78100.1
MSHA biogenesis protein MshG.
   
 0.810
SHG11921.1
Type IV pilus assembly protein PilC.
   
 0.810
SHF88593.1
General secretion pathway protein F.
 
   
 0.804
SHG93249.1
Type IV pilus assembly protein PilQ.
 
   
 0.782
SHG67198.1
Putative signal transducing protein.
       0.762
SHG93325.1
Type IV pilus assembly protein PilO.
 
  
 0.708
SHG67298.1
Hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.631
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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