STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG74682.1Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily. (344 aa)    
Predicted Functional Partners:
SHG74655.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.773
SHG33664.1
Diacylglycerol kinase family enzyme.
   
 0.744
fcl
GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
   
 0.668
SHH42183.1
UDP-glucose 4-epimerase.
   
 0.668
SHG05555.1
Nucleoside-diphosphate-sugar epimerase.
   
 0.668
SHG08744.1
UDP-glucuronate 4-epimerase.
   
 0.668
fcl-2
GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
   
 0.668
SHH21608.1
UDP-glucuronate decarboxylase.
   
 0.668
SHH30349.1
Nucleoside-diphosphate-sugar epimerase.
   
 0.668
SHF75020.1
Glycine/D-amino acid oxidase.
   
 0.662
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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