STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG75689.1Outer membrane receptor proteins, mostly Fe transport. (752 aa)    
Predicted Functional Partners:
SHG75758.1
Fucose permease.
 
     0.834
SHH31020.1
TonB-dependent receptor.
  
  
  0.766
SHG83982.1
Hypothetical protein.
  
 
   0.759
SHF92143.1
TonB-dependent receptor.
  
  
  0.742
SHH11074.1
Ig-like domain (group 1).
  
 
   0.736
SHG02175.1
Iron complex outermembrane recepter protein.
  
  
  0.692
SHG75720.1
DNA-binding transcriptional regulator, LacI/PurR family.
 
     0.672
SHG90543.1
Carbohydrate family 9 binding domain-like.
  
 
   0.672
SHG16101.1
Outer membrane receptor proteins, mostly Fe transport.
  
  
  0.671
SHH09911.1
TonB-dependent receptor.
 
  
 0.668
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.