STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG86378.1Choline dehydrogenase. (575 aa)    
Predicted Functional Partners:
SHG86353.1
Gluconate 2-dehydrogenase subunit 3.
 
 0.957
SHG86407.1
Sugar phosphate isomerase/epimerase.
 
     0.908
SHF74685.1
Gluconate 2-dehydrogenase subunit 3.
 
 0.871
SHG74201.1
Gluconate 2-dehydrogenase subunit 3.
 
 0.871
SHF71863.1
Cytochrome c, mono-and diheme variants.
  
 
 0.817
SHF74656.1
Protein of unknown function.
 
     0.768
SHG41573.1
Ankyrin repeat.
    
 0.755
SHH17837.1
Ankyrin repeat-containing protein.
    
 0.755
SHH20160.1
Ankyrin repeat.
    
 0.755
SHF74738.1
Hydroxypyruvate isomerase.
 
     0.749
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.