STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG87990.1Membrane-associated phospholipid phosphatase. (290 aa)    
Predicted Functional Partners:
SHG87958.1
Lipid A ethanolaminephosphotransferase.
   
 0.915
rplF
Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.736
SHF81747.1
Undecaprenyl-diphosphatase.
  
  
  0.717
SHG87897.1
Lipid A ethanolaminephosphotransferase.
   
 0.675
SHG87873.1
Diacylglycerol kinase (ATP); Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
    
 0.674
SHG05757.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
  0.664
SHG40366.1
fatty-acyl-CoA synthase.
    
  0.664
SHG42879.1
Long-chain acyl-CoA synthetase.
    
  0.664
SHG85369.1
fatty-acyl-CoA synthase.
    
  0.664
SHG22739.1
Glutamate decarboxylase.
    
 0.646
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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