STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG93249.1Type IV pilus assembly protein PilQ. (591 aa)    
Predicted Functional Partners:
SHG93285.1
Type IV pilus assembly protein PilP.
 
 
 0.998
SHG93358.1
Type IV pilus assembly protein PilN.
 
 
 0.997
SHG93390.1
Type IV pilus assembly protein PilM.
 
 
 0.995
SHG93325.1
Type IV pilus assembly protein PilO.
 
 
 0.993
SHF93850.1
LysM domain-containing protein.
 
 
 
 0.984
SHF78340.1
Hypothetical protein.
  
 
 0.902
SHG11921.1
Type IV pilus assembly protein PilC.
 
 
 
 0.887
SHG11893.1
Type IV pilus assembly protein PilA; Belongs to the N-Me-Phe pilin family.
 
   
 0.787
SHG67265.1
Pilus retraction ATPase PilT.
 
   
 0.782
SHF78372.1
MSHA biogenesis protein MshI.
  
 
 0.778
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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