STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH07843.1RDD family protein. (380 aa)    
Predicted Functional Partners:
SHH07822.1
Molybdenum cofactor cytidylyltransferase.
       0.774
SHH07790.1
Membrane associated serine protease, rhomboid family; Manually curated.
       0.675
SHG34490.1
Tetrapyrrole (Corrin/Porphyrin) Methylases.
  
     0.663
SHF76867.1
Phage integrase family protein.
  
    0.647
SHG83982.1
Hypothetical protein.
  
     0.614
SHH11074.1
Ig-like domain (group 1).
  
     0.608
SHG06485.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.577
SHG75624.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.571
SHF88498.1
Ribosome-associated heat shock protein Hsp15; Belongs to the HSP15 family.
   
    0.553
SHG10387.1
Iron complex outermembrane recepter protein.
  
     0.548
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.