STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH11327.1DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor. (261 aa)    
Predicted Functional Partners:
SHH11355.1
Sugar (pentulose or hexulose) kinase.
 
  
 0.902
SHH11303.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
  
 0.860
SHH11275.1
L-rhamnose isomerase / sugar isomerase.
 
     0.811
rhaM
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.
 
    0.702
SHG17257.1
PTS system, nitrogen regulatory IIA component.
 
  
 0.561
SHG31164.1
6-phosphofructokinase 1; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family.
  
   
 0.503
SHG64657.1
2-dehydro-3-deoxygluconokinase; Manually curated.
 
 
 0.473
SHF90291.1
2-dehydro-3-deoxygluconokinase.
 
 
 0.441
SHG05379.1
Transketolase.
    
  0.405
SHG05403.1
Transketolase.
    
  0.405
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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