STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH11355.1Sugar (pentulose or hexulose) kinase. (476 aa)    
Predicted Functional Partners:
SHH11303.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
 
 0.972
rhaM
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.
 
  
 0.957
SHH11275.1
L-rhamnose isomerase / sugar isomerase.
 
  
 0.914
SHH11327.1
DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor.
 
  
 0.902
SHF81053.1
L-ribulose-5-phosphate 4-epimerase.
  
 
 0.700
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.692
SHG92965.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.624
SHG17312.1
Phosphocarrier protein NPr.
    
 
 0.597
SHF90646.1
Sugar phosphate isomerase/epimerase.
 
 
 0.578
tdh
Threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family.
  
 
 0.546
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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