STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH18493.1CAAX protease self-immunity. (212 aa)    
Predicted Functional Partners:
SHF85889.1
Uncharacterized membrane protein.
 
    0.658
SHH43087.1
Capsular polysaccharide synthesis protein.
  
     0.636
SHG72214.1
Putative, 10TM heavy-metal exporter.
  
     0.628
SHH43118.1
Hypothetical protein.
  
     0.605
SHF79705.1
ABC-2 type transport system permease protein.
 
 
  0.539
SHF75085.1
Iron complex outermembrane recepter protein.
  
     0.530
SHG03320.1
Carboxypeptidase regulatory-like domain-containing protein.
  
     0.524
SHH43148.1
Hypothetical protein.
  
     0.508
SHG42427.1
Acyltransferase, WS/DGAT/MGAT.
  
     0.451
SHH19053.1
Protein of unknown function.
  
     0.413
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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