STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH22757.1Multidrug resistance efflux pump. (329 aa)    
Predicted Functional Partners:
SHH22822.1
Putative ABC transport system permease protein.
 
  
 0.968
SHH22692.1
Putative ABC transport system ATP-binding protein.
 
 
 0.919
SHH22793.1
RND family efflux transporter, MFP subunit.
 
  
 
0.873
SHH22722.1
Barrel-sandwich domain of CusB or HlyD membrane-fusion.
 
    
0.855
macB
Macrolide transport system ATP-binding/permease protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.843
SHH36294.1
Outer membrane protein.
 
 0.833
SHH41482.1
ATP-binding cassette, subfamily C, LapB; Manually curated.
  
 0.801
SHG21747.1
ATP-binding cassette, subfamily B, RaxB.
  
 0.801
SHH20986.1
ABC-type multidrug transport system, ATPase and permease component.
  
 0.801
SHG75312.1
Outer membrane protein, multidrug efflux system.
 
 0.786
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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