STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH23290.1Hypothetical protein. (211 aa)    
Predicted Functional Partners:
SHH23326.1
Protein of unknown function.
 
    0.955
SHH23258.1
Hypothetical protein.
 
     0.953
SHH11805.1
Hypothetical protein.
  
     0.594
SHH29989.1
Hypothetical protein.
  
     0.558
SHG41453.1
Pilus assembly protein FimV.
  
     0.552
SHG66363.1
Chromosome partitioning protein.
  
     0.550
SHG08835.1
N-acyl amino acid synthase, PEP-CTERM/exosortase system-associated.
  
     0.533
SHG06218.1
Hypothetical protein.
  
     0.521
SHH23230.1
Tellurite resistance protein TerB.
       0.483
SHG31314.1
c-di-GMP-binding flagellar brake protein YcgR, contains PilZNR and PilZ domains.
  
     0.463
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.