STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH31507.1AraC-type DNA-binding protein. (394 aa)    
Predicted Functional Partners:
SHH31478.1
Aryl-phospho-beta-D-glucosidase BglC, GH1 family; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.796
SHH31547.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
    
  0.756
SHG68731.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.736
SHG85625.1
GDSL-like Lipase/Acylhydrolase family protein.
  
     0.691
SHF77466.1
PEP-CTERM protein-sorting domain-containing protein/choice-of-anchor A domain-containing protein.
  
     0.660
SHG39876.1
AraC family transcriptional regulator, transcriptional activator of pobA.
  
   0.594
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.582
SHG86248.1
Na+/melibiose symporter.
  
     0.562
SHH24304.1
Beta-galactosidase GanA.
  
     0.558
SHF84774.1
AraC-type DNA-binding protein.
  
     0.547
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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