Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HAH_0650 | hit1 | HAH_0650 | HAH_0651 | Conserved hypothetical protein. | Histidine triad protein. | 0.525 |
HAH_0652 | cef | HAH_0652 | HAH_0653 | Rieske (2Fe-2S) domain-containing protein. | Cation efflux system protein (zinc/cadmium). | 0.642 |
HAH_0652 | hit1 | HAH_0652 | HAH_0651 | Rieske (2Fe-2S) domain-containing protein. | Histidine triad protein. | 0.539 |
HAH_4005 | hit1 | HAH_4005 | HAH_0651 | Conserved hypothetical protein. | Histidine triad protein. | 0.532 |
HAH_4005 | thrS | HAH_4005 | HAH_0686 | Conserved hypothetical protein. | threonyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.518 |
cef | HAH_0652 | HAH_0653 | HAH_0652 | Cation efflux system protein (zinc/cadmium). | Rieske (2Fe-2S) domain-containing protein. | 0.642 |
cef | hit1 | HAH_0653 | HAH_0651 | Cation efflux system protein (zinc/cadmium). | Histidine triad protein. | 0.531 |
hit1 | HAH_0650 | HAH_0651 | HAH_0650 | Histidine triad protein. | Conserved hypothetical protein. | 0.525 |
hit1 | HAH_0652 | HAH_0651 | HAH_0652 | Histidine triad protein. | Rieske (2Fe-2S) domain-containing protein. | 0.539 |
hit1 | HAH_4005 | HAH_0651 | HAH_4005 | Histidine triad protein. | Conserved hypothetical protein. | 0.532 |
hit1 | cef | HAH_0651 | HAH_0653 | Histidine triad protein. | Cation efflux system protein (zinc/cadmium). | 0.531 |
hit1 | map | HAH_0651 | HAH_0649 | Histidine triad protein. | Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val); Belongs to the peptidase M24A family. Methionine aminopeptidase archaeal type 2 subfamily. | 0.555 |
hit1 | nop1 | HAH_0651 | HAH_1503 | Histidine triad protein. | Fibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | 0.525 |
hit1 | rpoK | HAH_0651 | HAH_0827 | Histidine triad protein. | DNA-directed RNA polymerase subunit K; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family. | 0.510 |
hit1 | rpoN | HAH_0651 | HAH_0826 | Histidine triad protein. | DNA-directed RNA polymerase subunit N; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family. | 0.495 |
hit1 | tbp | HAH_0651 | HAH_1334 | Histidine triad protein. | Transcription factor / TATA-box binding family protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. | 0.680 |
hit1 | thrS | HAH_0651 | HAH_0686 | Histidine triad protein. | threonyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.725 |
map | hit1 | HAH_0649 | HAH_0651 | Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val); Belongs to the peptidase M24A family. Methionine aminopeptidase archaeal type 2 subfamily. | Histidine triad protein. | 0.555 |
map | nop1 | HAH_0649 | HAH_1503 | Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val); Belongs to the peptidase M24A family. Methionine aminopeptidase archaeal type 2 subfamily. | Fibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | 0.641 |
map | rpoK | HAH_0649 | HAH_0827 | Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val); Belongs to the peptidase M24A family. Methionine aminopeptidase archaeal type 2 subfamily. | DNA-directed RNA polymerase subunit K; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family. | 0.451 |
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