Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HAH_0092 | HAH_1046 | HAH_0092 | HAH_1046 | TrkA-N domain protein. | Conserved hypothetical protein. | 0.401 |
HAH_0092 | fen | HAH_0092 | HAH_0793 | TrkA-N domain protein. | Flap endonuclease-1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. A [...] | 0.594 |
HAH_0092 | nhaA | HAH_0092 | HAH_2985 | TrkA-N domain protein. | Na+/H+ antiporter, NhaA family. | 0.531 |
HAH_1046 | HAH_0092 | HAH_1046 | HAH_0092 | Conserved hypothetical protein. | TrkA-N domain protein. | 0.401 |
HAH_1046 | HAH_1047 | HAH_1046 | HAH_1047 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.528 |
HAH_1046 | bacA | HAH_1046 | HAH_0473 | Conserved hypothetical protein. | Bacitracin resistance protein. | 0.630 |
HAH_1046 | fen | HAH_1046 | HAH_0793 | Conserved hypothetical protein. | Flap endonuclease-1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. A [...] | 0.442 |
HAH_1046 | nhaA | HAH_1046 | HAH_2985 | Conserved hypothetical protein. | Na+/H+ antiporter, NhaA family. | 0.413 |
HAH_1047 | HAH_1046 | HAH_1047 | HAH_1046 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.528 |
bacA | HAH_1046 | HAH_0473 | HAH_1046 | Bacitracin resistance protein. | Conserved hypothetical protein. | 0.630 |
fen | HAH_0092 | HAH_0793 | HAH_0092 | Flap endonuclease-1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. A [...] | TrkA-N domain protein. | 0.594 |
fen | HAH_1046 | HAH_0793 | HAH_1046 | Flap endonuclease-1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. A [...] | Conserved hypothetical protein. | 0.442 |
fen | nhaA | HAH_0793 | HAH_2985 | Flap endonuclease-1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. A [...] | Na+/H+ antiporter, NhaA family. | 0.594 |
nhaA | HAH_0092 | HAH_2985 | HAH_0092 | Na+/H+ antiporter, NhaA family. | TrkA-N domain protein. | 0.531 |
nhaA | HAH_1046 | HAH_2985 | HAH_1046 | Na+/H+ antiporter, NhaA family. | Conserved hypothetical protein. | 0.413 |
nhaA | fen | HAH_2985 | HAH_0793 | Na+/H+ antiporter, NhaA family. | Flap endonuclease-1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. A [...] | 0.594 |