STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HAH_1285Conserved hypothetical protein. (166 aa)    
Predicted Functional Partners:
sun
tRNA and rRNA cytosine-C5-methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
     0.905
HAH_1287
Conserved hypothetical protein.
 
     0.714
argA1
Acetyltransferase.
 
     0.574
sppA1
Putative signal peptide peptidase SppA / protease IV-like protein.
       0.572
HAH_1289
Conserved hypothetical protein.
 
     0.565
HAH_2335
Conserved hypothetical protein.
  
     0.558
gntR
Transcription regulator.
  
     0.549
udg3
Uracil DNA glycosylase superfamily protein.
  
     0.517
top1
Topoisomerase DNA binding C4 zinc finger.
  
     0.516
uvrD
Repair helicase.
  
     0.513
Your Current Organism:
Haloarcula hispanica
NCBI taxonomy Id: 634497
Other names: H. hispanica ATCC 33960, Haloarcula hispanica ATCC 33960, Haloarcula hispanica DSM 4426, Haloarcula hispanica JCM 8911, Haloarcula hispanica str. ATCC 33960, Haloarcula hispanica strain ATCC 33960
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.