STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livK5Branched-chain amino acid ABC transporter amino acid-binding protein. (439 aa)    
Predicted Functional Partners:
livM5
Branched-chain amino acid ABC transporter permease protein II.
 
 
 0.998
livH5
Branched-chain amino acid ABC transporter permease protein I.
 
 
 0.996
livH9
Branched-chain amino acid ABC transporter permease protein.
 
  
 0.960
livF4
Branched-chain amino acid ABC transporter ATP-binding protein.
 
  
 0.956
livG5
Branched-chain amino acid ABC transporter ATP-binding protein.
 
  
 0.914
livM6
Branched-chain amino acid ABC transporter permease protein.
 
  
 0.806
livM3
Branched-chain amino acid ABC transporter permease protein.
 
  
 0.801
HAH_1980
Universal stress protein.
       0.788
livH3
Branched-chain amino acid ABC transporter permease protein.
 
  
 0.775
livH6
Branched-chain amino acid ABC transporter permease protein.
 
  
 0.753
Your Current Organism:
Haloarcula hispanica
NCBI taxonomy Id: 634497
Other names: H. hispanica ATCC 33960, Haloarcula hispanica ATCC 33960, Haloarcula hispanica DSM 4426, Haloarcula hispanica JCM 8911, Haloarcula hispanica str. ATCC 33960, Haloarcula hispanica strain ATCC 33960
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