STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nirH3Heme biosynthesis protein. (351 aa)    
Predicted Functional Partners:
nirH2
Heme biosynthesis protein.
  
 0.859
hemX
uroporphyrin-III C-methyltransferase.
 
   
 0.812
hemA2
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
     
 0.780
pqqE
Coenzyme PQQ synthesis protein.
  
 0.766
phhB
Pterin-4-alpha-carbinolamine dehydratase.
     
 0.583
HAH_2246
Conserved hypothetical protein.
       0.554
HAH_2241
Conserved hypothetical protein.
       0.532
nosZ
Nitrous-oxide reductase.
  
  
 0.527
hemL
Glutamate-1-semialdehyde 21-aminomutase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily.
     
 0.479
pgp
3-phosphoglycerate kinase.
 
     0.476
Your Current Organism:
Haloarcula hispanica
NCBI taxonomy Id: 634497
Other names: H. hispanica ATCC 33960, Haloarcula hispanica ATCC 33960, Haloarcula hispanica DSM 4426, Haloarcula hispanica JCM 8911, Haloarcula hispanica str. ATCC 33960, Haloarcula hispanica strain ATCC 33960
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