STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpg2LPS glycosyltransferase. (345 aa)    
Predicted Functional Partners:
ugd1
UDP-glucose 6-dehydrogenase.
 
  
 0.660
HAH_2740
Conserved hypothetical protein.
   
 
 0.648
HAH_1663
Putative glycosyltransferase.
  
     0.591
malQ
4-alpha-glucanotransferase.
     
 0.570
lpg1
LPS glycosyltransferase.
 
     0.561
HAH_2880
Conserved hypothetical protein.
 
  
 0.537
rfbX1
Putative export protein.
 
  
 0.531
HAH_2117
Putative glycosyltransferase.
 
     0.520
HAH_0487
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
  
 0.483
pknA2
Serine/threonine-protein kinase PknA.
 
 
 0.467
Your Current Organism:
Haloarcula hispanica
NCBI taxonomy Id: 634497
Other names: H. hispanica ATCC 33960, Haloarcula hispanica ATCC 33960, Haloarcula hispanica DSM 4426, Haloarcula hispanica JCM 8911, Haloarcula hispanica str. ATCC 33960, Haloarcula hispanica strain ATCC 33960
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.