STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HAH_3003TRAP-type transport system protein small subunit. (153 aa)    
Predicted Functional Partners:
HAH_3002
TRAP transporter, 4TM/12TM fusion protein.
 
    0.938
HAH_3004
TRAP transporter solute receptor, TAXI family / immunogenic protein.
 
    0.834
dpm2
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.680
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
       0.665
HAH_2464
DNA binding protein.
  
     0.635
rad3a
Helicase.
  
     0.557
cbiX1
Cobalamin (vitamin B12) biosynthesis CbiX protein.
  
     0.552
HAH_4093
Conserved hypothetical protein.
  
     0.545
HAH_1544
Conserved hypothetical protein.
  
     0.544
HAH_2405
DSBA-like thioredoxin domain-containing protein.
  
     0.505
Your Current Organism:
Haloarcula hispanica
NCBI taxonomy Id: 634497
Other names: H. hispanica ATCC 33960, Haloarcula hispanica ATCC 33960, Haloarcula hispanica DSM 4426, Haloarcula hispanica JCM 8911, Haloarcula hispanica str. ATCC 33960, Haloarcula hispanica strain ATCC 33960
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.