STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HAH_3103Conserved hypothetical protein. (228 aa)    
Predicted Functional Partners:
HAH_3104
Conserved hypothetical protein.
 
   
 0.960
gbp4
GTP-binding protein HSR1-related protein.
 
   
 0.940
coxA2
Cytochrome c oxidase subunit I.
  
     0.745
HAH_1629
Conserved hypothetical protein.
  
     0.741
stt3
Transmembrane oligosaccharyl transferase.
  
     0.737
HAH_0981
Conserved hypothetical protein.
  
     0.732
sec11a
Signal sequence peptidase.
  
     0.711
HAH_2267
Conserved hypothetical protein.
  
     0.707
flaJ
Type II secretion system protein / archaeal flagella assembly protein J.
  
     0.706
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.706
Your Current Organism:
Haloarcula hispanica
NCBI taxonomy Id: 634497
Other names: H. hispanica ATCC 33960, Haloarcula hispanica ATCC 33960, Haloarcula hispanica DSM 4426, Haloarcula hispanica JCM 8911, Haloarcula hispanica str. ATCC 33960, Haloarcula hispanica strain ATCC 33960
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.