STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabDSuccinate-semialdehyde dehydrogenase. (453 aa)    
Predicted Functional Partners:
sdhA1
Succinate dehydrogenase, subunit A (flavoprotein).
  
 0.941
gabT
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.941
sdhA2
Succinate dehydrogenase, subunit A (flavoprotein).
  
 0.941
sdhB
Succinate dehydrogenase, subunit B (iron-sulfur protein).
  
 
 0.925
citZ
Citrate synthase II.
  
 0.918
sdhD
Succinate dehydrogenase, subunit D (membrane anchor protein).
   
 
 0.912
sdhC
Succinate dehydrogenase, subunit C (cytochrome b-556).
  
 
 0.911
fumC
Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
 0.854
mdhA
Malate dehydrogenase; Belongs to the LDH/MDH superfamily.
  
 0.852
porA
Pyruvate ferredoxin oxidoreductase subunit alpha.
   
 0.843
Your Current Organism:
Haloarcula hispanica
NCBI taxonomy Id: 634497
Other names: H. hispanica ATCC 33960, Haloarcula hispanica ATCC 33960, Haloarcula hispanica DSM 4426, Haloarcula hispanica JCM 8911, Haloarcula hispanica str. ATCC 33960, Haloarcula hispanica strain ATCC 33960
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.