Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mru_0270Phage-related protein. (144 aa)    
Predicted Functional Partners:
mru_0269
ATPase involved in DNA replication control MCM family.
       0.773
mru_0264
Hypothetical protein.
       0.594
mru_0265
Hypothetical protein.
       0.594
mru_0266
Hypothetical protein.
       0.594
mru_0267
Hypothetical protein.
       0.594
mru_0268
Hypothetical protein.
       0.594
mru_0262
Hypothetical protein.
       0.586
mru_0263
Hypothetical protein.
       0.586
mru_0271
Hypothetical protein.
       0.430
mru_0272
Hypothetical protein.
       0.430
Your Current Organism:
Methanobrevibacter ruminantium
NCBI taxonomy Id: 634498
Other names: M. ruminantium M1, Methanobrevibacter ruminantium M1, Methanobrevibacter ruminantium str. M1, Methanobrevibacter ruminantium strain M1
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