Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mru_1042Cell wall biosynthesis protein Mur ligase family. (539 aa)    
Predicted Functional Partners:
mru_1041
Cell wall biosynthesis protein phospho-N-acetylmuramoyl-pentapeptide-transferase family.
 
  
 0.947
mru_1745
Cell wall biosynthesis protein Mur ligase family.
 
  
 0.873
rpoB1
DNA-directed RNA polymerase subunit B' RpoB1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.798
rpoB2
DNA-directed RNA polymerase subunit B'' RpoB2; Belongs to the RNA polymerase beta chain family.
  
 
 0.798
rps11
Ribosomal protein S11P Rps11p; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
   
 
 0.783
mru_0183
Protein disulfide-isomerase thioredoxin-related protein.
   
 
 0.711
mru_1678
Redox-active disulfide protein.
   
 
 0.711
mru_0964
Cell wall biosynthesis protein phospho-N-acetylmuramoyl-pentapeptide-transferase family.
 
  
 0.684
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
 
  
 0.673
mru_2091
Cell wall biosynthesis protein Mur ligase family.
 
   
 0.636
Your Current Organism:
Methanobrevibacter ruminantium
NCBI taxonomy Id: 634498
Other names: M. ruminantium M1, Methanobrevibacter ruminantium M1, Methanobrevibacter ruminantium str. M1, Methanobrevibacter ruminantium strain M1
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