Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
ehbDEnergy-converting hydrogenase B subunit D EhbD. (76 aa)    
Predicted Functional Partners:
ehbE
Energy-converting hydrogenase B subunit E EhbE.
  
 
 0.980
ehbC
Energy-converting hydrogenase B subunit C EhbC.
  
 
 0.977
ehbF
Energy-converting hydrogenase B subunit F EhbF.
  
 
 0.975
ehbI
Energy-converting hydrogenase B subunit I EhbI.
   
 
 0.972
ehbB
Energy-converting hydrogenase B subunit B EhbB.
   
 
 0.968
ehbH
Energy-converting hydrogenase B subunit H EhbH.
   
 
 0.965
ehbA
Energy-converting hydrogenase B subunit A EhbA.
  
 
 0.959
ehbL
Energy-converting hydrogenase B subunit L EhbL.
   
   0.913
ehbG
Energy-converting hydrogenase B subunit G EhbG.
       0.905
ehbJ
Energy-converting hydrogenase B subunit J EhbJ.
       0.902
Your Current Organism:
Methanobrevibacter ruminantium
NCBI taxonomy Id: 634498
Other names: M. ruminantium M1, Methanobrevibacter ruminantium M1, Methanobrevibacter ruminantium str. M1, Methanobrevibacter ruminantium strain M1
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