STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bgr_01310Hypothetical protein; SH3 domain. (186 aa)    
Predicted Functional Partners:
rpmD
50S ribosomal protein L30.
  
     0.604
Bgr_13790
Hypothetical protein.
  
     0.590
Bgr_18580
Hypothetical protein; Belongs to the UPF0335 family.
  
     0.537
atpF1
ATP synthase subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.493
addB
Double-strand break repair protein AddB.
  
     0.461
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.460
Bgr_06290
DNA polymerase III subunit chi.
  
     0.458
Bgr_18680
Transcriptional regulator, CarD family.
  
     0.447
Bgr_09360
Glutathione S-transferase.
  
     0.439
Bgr_04770
Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
  
     0.435
Your Current Organism:
Bartonella grahamii
NCBI taxonomy Id: 634504
Other names: B. grahamii as4aup, Bartonella grahamii as4aup, Bartonella grahamii str. as4aup, Bartonella grahamii strain as4aup
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.