Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Bgr_04790 | invA | Bgr_04790 | Bgr_01730 | Processing protease; Belongs to the peptidase M16 family. | Invasion-associated protein A; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.626 |
| Bgr_07320 | invA | Bgr_07320 | Bgr_01730 | ATP-dependent RNA helicase, DEAD/DEAH box family; Belongs to the DEAD box helicase family. | Invasion-associated protein A; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.857 |
| Bgr_07320 | vacB | Bgr_07320 | Bgr_11160 | ATP-dependent RNA helicase, DEAD/DEAH box family; Belongs to the DEAD box helicase family. | Exoribonuclease; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.502 |
| ctpA | filA | Bgr_01720 | Bgr_01710 | Carboxy-terminal protease; Belongs to the peptidase S41A family. | filament-A percursor. | 0.921 |
| ctpA | invA | Bgr_01720 | Bgr_01730 | Carboxy-terminal protease; Belongs to the peptidase S41A family. | Invasion-associated protein A; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.831 |
| ctpA | invB | Bgr_01720 | Bgr_01740 | Carboxy-terminal protease; Belongs to the peptidase S41A family. | Invasion-associated protein B. | 0.725 |
| ctpA | mutT | Bgr_01720 | Bgr_02120 | Carboxy-terminal protease; Belongs to the peptidase S41A family. | Mutator MutT protein. | 0.600 |
| dapF | invA | Bgr_20180 | Bgr_01730 | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | Invasion-associated protein A; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.796 |
| fabD | invA | Bgr_06170 | Bgr_01730 | Malonyl CoA-acyl carrier protein transacylase FabD. | Invasion-associated protein A; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.578 |
| filA | ctpA | Bgr_01710 | Bgr_01720 | filament-A percursor. | Carboxy-terminal protease; Belongs to the peptidase S41A family. | 0.921 |
| filA | invA | Bgr_01710 | Bgr_01730 | filament-A percursor. | Invasion-associated protein A; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.699 |
| filA | invB | Bgr_01710 | Bgr_01740 | filament-A percursor. | Invasion-associated protein B. | 0.445 |
| invA | Bgr_04790 | Bgr_01730 | Bgr_04790 | Invasion-associated protein A; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | Processing protease; Belongs to the peptidase M16 family. | 0.626 |
| invA | Bgr_07320 | Bgr_01730 | Bgr_07320 | Invasion-associated protein A; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | ATP-dependent RNA helicase, DEAD/DEAH box family; Belongs to the DEAD box helicase family. | 0.857 |
| invA | ctpA | Bgr_01730 | Bgr_01720 | Invasion-associated protein A; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | Carboxy-terminal protease; Belongs to the peptidase S41A family. | 0.831 |
| invA | dapF | Bgr_01730 | Bgr_20180 | Invasion-associated protein A; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.796 |
| invA | fabD | Bgr_01730 | Bgr_06170 | Invasion-associated protein A; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | Malonyl CoA-acyl carrier protein transacylase FabD. | 0.578 |
| invA | filA | Bgr_01730 | Bgr_01710 | Invasion-associated protein A; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | filament-A percursor. | 0.699 |
| invA | invB | Bgr_01730 | Bgr_01740 | Invasion-associated protein A; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | Invasion-associated protein B. | 0.762 |
| invA | mutT | Bgr_01730 | Bgr_02120 | Invasion-associated protein A; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | Mutator MutT protein. | 0.602 |
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