gpW1 protein (Bartonella grahamii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gpW1

Phage baseplate assembly protein GpW1. (109 aa)

Predicted Functional Partners:

gpJ1

0.989

gpV1

0.987

gpFI

0.960

gpFI-2

0.960

gpFI-3

0.960

Bgr_03410

0.957

gpX1

0.955

gpX2

0.955

gpJ2

0.955

gpD1

0.953

Your Current Organism:

Bartonella grahamii

NCBI taxonomy Id: 634504
Other names: B. grahamii as4aup, Bartonella grahamii as4aup, Bartonella grahamii str. as4aup, Bartonella grahamii strain as4aup

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bgr_03410	gpD1	Bgr_03410	Bgr_03310	Phage protein.	Phage late control protein D1.	0.606
Bgr_03410	gpFI	Bgr_03410	Bgr_03370	Phage protein.	Phage tail sheath protein FI.	0.778
Bgr_03410	gpFI-2	Bgr_03410	Bgr_08800	Phage protein.	Phage tail sheath protein FI.	0.778
Bgr_03410	gpFI-3	Bgr_03410	Bgr_16220	Phage protein.	Phage tail sheath protein FI.	0.778
Bgr_03410	gpJ1	Bgr_03410	Bgr_03420	Phage protein.	Phage baseplate assembly protein GpJ1.	0.964
Bgr_03410	gpJ2	Bgr_03410	Bgr_08900	Phage protein.	Phage baseplate assembly protein GpJ2.	0.849
Bgr_03410	gpV1	Bgr_03410	Bgr_03440	Phage protein.	Phage baseplate assembly protein V1.	0.916
Bgr_03410	gpW1	Bgr_03410	Bgr_03430	Phage protein.	Phage baseplate assembly protein GpW1.	0.957
Bgr_03410	gpX1	Bgr_03410	Bgr_03320	Phage protein.	Phage tail protein X1.	0.765
Bgr_03410	gpX2	Bgr_03410	Bgr_08750	Phage protein.	Phage tail protein X2.	0.765
gpD1	Bgr_03410	Bgr_03310	Bgr_03410	Phage late control protein D1.	Phage protein.	0.606
gpD1	gpFI	Bgr_03310	Bgr_03370	Phage late control protein D1.	Phage tail sheath protein FI.	0.973
gpD1	gpFI-2	Bgr_03310	Bgr_08800	Phage late control protein D1.	Phage tail sheath protein FI.	0.946
gpD1	gpFI-3	Bgr_03310	Bgr_16220	Phage late control protein D1.	Phage tail sheath protein FI.	0.946
gpD1	gpJ1	Bgr_03310	Bgr_03420	Phage late control protein D1.	Phage baseplate assembly protein GpJ1.	0.907
gpD1	gpJ2	Bgr_03310	Bgr_08900	Phage late control protein D1.	Phage baseplate assembly protein GpJ2.	0.907
gpD1	gpV1	Bgr_03310	Bgr_03440	Phage late control protein D1.	Phage baseplate assembly protein V1.	0.897
gpD1	gpW1	Bgr_03310	Bgr_03430	Phage late control protein D1.	Phage baseplate assembly protein GpW1.	0.953
gpD1	gpX1	Bgr_03310	Bgr_03320	Phage late control protein D1.	Phage tail protein X1.	0.978
gpD1	gpX2	Bgr_03310	Bgr_08750	Phage late control protein D1.	Phage tail protein X2.	0.907