Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gpV1Phage baseplate assembly protein V1. (229 aa)    
Predicted Functional Partners:
gpW1
Phage baseplate assembly protein GpW1.
 
 
 0.987
gpJ1
Phage baseplate assembly protein GpJ1.
 
  
 0.981
gpW2
Phage baseplate assembly protein GpW2.
 
 
 0.946
gpW3
Phage baseplate assembly protein gpW3.
 
 
 0.946
gpFI
Phage tail sheath protein FI.
 
 
 0.938
gpFI-2
Phage tail sheath protein FI.
 
 
 0.938
gpFI-3
Phage tail sheath protein FI.
 
 
 0.938
gpJ2
Phage baseplate assembly protein GpJ2.
 
  
 0.923
Bgr_03410
Phage protein.
  
  
 0.921
gpX1
Phage tail protein X1.
 
  
 0.920
Your Current Organism:
Bartonella grahamii
NCBI taxonomy Id: 634504
Other names: B. grahamii as4aup, Bartonella grahamii as4aup, Bartonella grahamii str. as4aup, Bartonella grahamii strain as4aup
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