Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bgr_03480HicB family protein. (105 aa)    
Predicted Functional Partners:
Bgr_03460
Hypothetical protein.
       0.645
Bgr_03470
Hypothetical protein.
       0.645
Bgr_03400
Phage related protein, virulence-associated.
       0.469
Bgr_03410
Phage protein.
       0.469
gpJ1
Phage baseplate assembly protein GpJ1.
       0.469
gpW1
Phage baseplate assembly protein GpW1.
       0.469
gpV1
Phage baseplate assembly protein V1.
       0.469
Bgr_03450
Hypothetical protein.
       0.469
Bgr_03390
Phage tail collar protein.
       0.455
Your Current Organism:
Bartonella grahamii
NCBI taxonomy Id: 634504
Other names: B. grahamii as4aup, Bartonella grahamii as4aup, Bartonella grahamii str. as4aup, Bartonella grahamii strain as4aup
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