Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Bgr_04550 | Bgr_04560 | Bgr_04550 | Bgr_04560 | Translation factor, Sua5/YciO/YrdC family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | Oxidoreductase. | 0.786 |
Bgr_04550 | rnhB | Bgr_04550 | Bgr_04540 | Translation factor, Sua5/YciO/YrdC family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.796 |
Bgr_04560 | Bgr_04550 | Bgr_04560 | Bgr_04550 | Oxidoreductase. | Translation factor, Sua5/YciO/YrdC family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | 0.786 |
Bgr_04560 | Bgr_09470 | Bgr_04560 | Bgr_09470 | Oxidoreductase. | Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone. | 0.572 |
Bgr_04560 | atpD | Bgr_04560 | Bgr_18820 | Oxidoreductase. | ATP synthase beta chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | 0.610 |
Bgr_04560 | etfA | Bgr_04560 | Bgr_09480 | Oxidoreductase. | Electron transfer flavoprotein alpha subunit. | 0.823 |
Bgr_04560 | etfB | Bgr_04560 | Bgr_09490 | Oxidoreductase. | Electron transfer flavoprotein beta subunit. | 0.811 |
Bgr_04560 | lldD | Bgr_04560 | Bgr_02870 | Oxidoreductase. | L-lactate dehydrogenase; Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain; Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family. | 0.808 |
Bgr_04560 | maeB1 | Bgr_04560 | Bgr_00990 | Oxidoreductase. | Malic enzyme. | 0.562 |
Bgr_04560 | maeB2 | Bgr_04560 | Bgr_11560 | Oxidoreductase. | Malic enzyme. | 0.562 |
Bgr_04560 | rnhB | Bgr_04560 | Bgr_04540 | Oxidoreductase. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.787 |
Bgr_04560 | ubiA | Bgr_04560 | Bgr_04600 | Oxidoreductase. | 4-hydroxybenzoate-octaprenyl transferase UbiA; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. | 0.680 |
Bgr_09470 | Bgr_04560 | Bgr_09470 | Bgr_04560 | Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone. | Oxidoreductase. | 0.572 |
Bgr_09470 | atpD | Bgr_09470 | Bgr_18820 | Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone. | ATP synthase beta chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | 0.470 |
Bgr_09470 | etfA | Bgr_09470 | Bgr_09480 | Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone. | Electron transfer flavoprotein alpha subunit. | 0.999 |
Bgr_09470 | etfB | Bgr_09470 | Bgr_09490 | Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone. | Electron transfer flavoprotein beta subunit. | 0.999 |
Bgr_09470 | maeB1 | Bgr_09470 | Bgr_00990 | Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone. | Malic enzyme. | 0.491 |
Bgr_09470 | maeB2 | Bgr_09470 | Bgr_11560 | Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone. | Malic enzyme. | 0.491 |
Bgr_09470 | ubiA | Bgr_09470 | Bgr_04600 | Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone. | 4-hydroxybenzoate-octaprenyl transferase UbiA; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. | 0.701 |
atpD | Bgr_04560 | Bgr_18820 | Bgr_04560 | ATP synthase beta chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | Oxidoreductase. | 0.610 |
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