STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bgr_05350ErfK/YbiS/YcfS/YnhG family protein. (247 aa)    
Predicted Functional Partners:
Bgr_19940
Putative lipoprotein.
 
  
 0.587
Bgr_04710
Invasion associated locus B family protein.
  
     0.536
Bgr_04780
Sensor diguanylate cyclase/phosphodiesterase.
 
   
 0.500
Bgr_12110
Hypothetical protein.
  
     0.495
Bgr_12180
Hypothetical protein.
  
     0.495
Bgr_14400
Hypothetical protein.
  
     0.493
Bgr_19610
Hypothetical protein.
  
     0.473
ychF
Translation-associated GTPase; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.469
Bgr_18660
ATP-dependent helicase (fragment).
  
     0.443
Bgr_06470
Hypothetical outer membrane protein.
  
     0.418
Your Current Organism:
Bartonella grahamii
NCBI taxonomy Id: 634504
Other names: B. grahamii as4aup, Bartonella grahamii as4aup, Bartonella grahamii str. as4aup, Bartonella grahamii strain as4aup
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.