STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bgr_06450Putative virulence determinant. (393 aa)    
Predicted Functional Partners:
hfq
Host factor-I protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
 
    0.572
pcm1
protein-L-isoaspartate O-methyltransferase.
     
 0.558
Bgr_10560
N-acetylmuramoyl-l-alanine amidase.
 
   
 0.497
mrcA2
Penicillin-binding protein.
 
   
 0.493
mrcA1
Penicillin-binding protein.
  
   
 0.484
Bgr_01830
Membrane-bound lytic murein transglycosylase.
     
 0.444
ftsI
Penicillin-binding protein.
 
   
 0.429
lebB
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.428
ftsW
Cell division protein FtsW; Belongs to the SEDS family.
 
   
 0.422
slt
Soluble lytic murein transglycosylase precursor.
 
   
 0.414
Your Current Organism:
Bartonella grahamii
NCBI taxonomy Id: 634504
Other names: B. grahamii as4aup, Bartonella grahamii as4aup, Bartonella grahamii str. as4aup, Bartonella grahamii strain as4aup
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.