STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bgr_06700Hypothetical protein. (224 aa)    
Predicted Functional Partners:
ntrY
Nitrogen regulation protein NtrY.
       0.768
ntrX
Nitrogen regulation protein NtrX.
       0.768
trkA
Potassium uptake protein TrkA.
       0.768
bepF
BepF protein.
  
     0.665
Bgr_11520
Hypothetical membrane protein.
 
     0.650
Bgr_12500
Autotransporter.
  
     0.649
Bgr_16090
Autotransporter.
  
     0.625
mccC
MccC protein.
  
     0.616
ibaE
Inducible Bartonella autotransporter E.
  
     0.614
Bgr_06330
Pertactin family virulence factor/autotransporter.
  
     0.609
Your Current Organism:
Bartonella grahamii
NCBI taxonomy Id: 634504
Other names: B. grahamii as4aup, Bartonella grahamii as4aup, Bartonella grahamii str. as4aup, Bartonella grahamii strain as4aup
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.