Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bgr_09080Phage protein. (189 aa)    
Predicted Functional Partners:
Bgr_09050
Phage portal protein.
 
     0.937
gpA2
Phage terminase large subunit GpA2.
 
     0.911
gp18-2
Phage protein Gp18.
 
     0.876
gp19-2
Phage protein Gp19.
 
     0.854
gp20-2
Phage protein Gp20.
 
     0.832
Bgr_09060
Putative phage related protein.
       0.775
Bgr_12500
Autotransporter.
  
     0.758
Bgr_16090
Autotransporter.
  
     0.757
ibaE
Inducible Bartonella autotransporter E.
  
     0.755
gp19
Phage protein Gp19.
 
     0.754
Your Current Organism:
Bartonella grahamii
NCBI taxonomy Id: 634504
Other names: B. grahamii as4aup, Bartonella grahamii as4aup, Bartonella grahamii str. as4aup, Bartonella grahamii strain as4aup
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