Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Bgr_04780 | dnaK | Bgr_04780 | Bgr_00640 | Sensor diguanylate cyclase/phosphodiesterase. | Heat shock protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.545 |
| Bgr_04780 | pnp | Bgr_04780 | Bgr_02200 | Sensor diguanylate cyclase/phosphodiesterase. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.428 |
| Bgr_04780 | rne | Bgr_04780 | Bgr_10550 | Sensor diguanylate cyclase/phosphodiesterase. | Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. | 0.563 |
| Bgr_04780 | rpoC | Bgr_04780 | Bgr_06940 | Sensor diguanylate cyclase/phosphodiesterase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.433 |
| Bgr_07320 | dnaK | Bgr_07320 | Bgr_00640 | ATP-dependent RNA helicase, DEAD/DEAH box family; Belongs to the DEAD box helicase family. | Heat shock protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.481 |
| Bgr_07320 | eno | Bgr_07320 | Bgr_06540 | ATP-dependent RNA helicase, DEAD/DEAH box family; Belongs to the DEAD box helicase family. | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.587 |
| Bgr_07320 | pcnB | Bgr_07320 | Bgr_05280 | ATP-dependent RNA helicase, DEAD/DEAH box family; Belongs to the DEAD box helicase family. | tRNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.470 |
| Bgr_07320 | pnp | Bgr_07320 | Bgr_02200 | ATP-dependent RNA helicase, DEAD/DEAH box family; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.920 |
| Bgr_07320 | rne | Bgr_07320 | Bgr_10550 | ATP-dependent RNA helicase, DEAD/DEAH box family; Belongs to the DEAD box helicase family. | Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. | 0.715 |
| Bgr_07320 | rpoC | Bgr_07320 | Bgr_06940 | ATP-dependent RNA helicase, DEAD/DEAH box family; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.809 |
| Bgr_07320 | vacB | Bgr_07320 | Bgr_11160 | ATP-dependent RNA helicase, DEAD/DEAH box family; Belongs to the DEAD box helicase family. | Exoribonuclease; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.502 |
| comL | rne | Bgr_13890 | Bgr_10550 | Competence lipoprotein ComL precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. | 0.540 |
| dnaK | Bgr_04780 | Bgr_00640 | Bgr_04780 | Heat shock protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Sensor diguanylate cyclase/phosphodiesterase. | 0.545 |
| dnaK | Bgr_07320 | Bgr_00640 | Bgr_07320 | Heat shock protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | ATP-dependent RNA helicase, DEAD/DEAH box family; Belongs to the DEAD box helicase family. | 0.481 |
| dnaK | eno | Bgr_00640 | Bgr_06540 | Heat shock protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.824 |
| dnaK | pnp | Bgr_00640 | Bgr_02200 | Heat shock protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.613 |
| dnaK | rhlE | Bgr_00640 | Bgr_13450 | Heat shock protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | 0.481 |
| dnaK | rne | Bgr_00640 | Bgr_10550 | Heat shock protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. | 0.629 |
| dnaK | rpoC | Bgr_00640 | Bgr_06940 | Heat shock protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.561 |
| dnaK | vacB | Bgr_00640 | Bgr_11160 | Heat shock protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Exoribonuclease; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.626 |
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