STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traG1Conjugal transfer protein TraG/VirD4. (638 aa)    
Predicted Functional Partners:
virB10
VirB10 protein.
 
 
 
 0.943
virB9
VirB9 protein.
 
   
 0.916
vblB10
VblB10 protein.
 
 
 
 0.907
traG2
Conjugal transfer protein TraG/VirD4.
  
  
 
0.903
virB8
VirB8 protein.
 
   
 0.900
virB4
VirB4 protein.
 
  
 0.896
trwE
TrwE protein.
 
 
 
 0.865
virB2
VirB2 protein.
 
   
 0.856
virB11
VirB11 protein.
 
   
 0.856
virB6
VirB6 protein.
 
   
 0.808
Your Current Organism:
Bartonella grahamii
NCBI taxonomy Id: 634504
Other names: B. grahamii as4aup, Bartonella grahamii as4aup, Bartonella grahamii str. as4aup, Bartonella grahamii strain as4aup
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.