STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bgr_16380Outer membrane protein, porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane. (399 aa)    
Predicted Functional Partners:
hbpB
Hemin binding protein B; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 0.934
hbpD
Hemin binding protein D.
  
 
 0.861
hbpC1
Hemin binding protein C.
  
 
 0.860
hbpA1
Hemin binding protein A.
  
 
 0.860
hbpA2
Hemin binding protein A.
  
 
 0.858
hbpE
Hemin binding protein E.
  
 
 0.858
hbpC2
Hemin binding protein C.
  
 
 0.858
Bgr_03870
Putative transmembrane protein.
  
     0.774
cycH
Cytochrome c-type biogenesis protein CycH.
  
     0.771
Bgr_18540
Hypothetical protein.
  
     0.770
Your Current Organism:
Bartonella grahamii
NCBI taxonomy Id: 634504
Other names: B. grahamii as4aup, Bartonella grahamii as4aup, Bartonella grahamii str. as4aup, Bartonella grahamii strain as4aup
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