STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ73041.1Glycosyl Hydrolase Family 88. (413 aa)    
Predicted Functional Partners:
SJZ73024.1
Protein of unknown function.
       0.773
SJZ72968.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.761
SJZ72997.1
Starch-binding associating with outer membrane.
 
     0.756
SJZ98059.1
Rhamnogalacturonyl hydrolase YesR.
  
     0.711
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.648
SJZ72902.1
Chondroitin AC lyase.
 
  
  0.608
SJZ72939.1
Ligand-binding sensor domain-containing protein.
 
     0.540
SJZ49295.1
Rhamnogalacturonyl hydrolase YesR.
  
     0.505
SJZ97973.1
Hypothetical protein.
 
     0.502
SJZ73062.1
Hypothetical protein.
       0.482
Your Current Organism:
Chitinophaga eiseniae
NCBI taxonomy Id: 634771
Other names: C. eiseniae, Chitinophaga eiseniae Yasir et al. 2011, Chitinophaga sp. YC6729, DSM 22224, KACC 13774, strain YC6729
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