Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SJZ43473.1 | SJZ78583.1 | SAMN04488128_101206 | SAMN04488128_1011587 | Outer membrane receptor proteins, mostly Fe transport. | Hypothetical protein. | 0.466 |
SJZ47596.1 | SJZ78583.1 | SAMN04488128_101382 | SAMN04488128_1011587 | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | Hypothetical protein. | 0.484 |
SJZ47596.1 | rplW | SAMN04488128_101382 | SAMN04488128_101266 | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | Large subunit ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
SJZ47596.1 | rplX | SAMN04488128_101382 | SAMN04488128_101275 | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | Large subunit ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
SJZ54000.1 | SJZ78583.1 | SAMN04488128_101641 | SAMN04488128_1011587 | TonB-dependent receptor. | Hypothetical protein. | 0.403 |
SJZ78565.1 | SJZ78583.1 | SAMN04488128_1011586 | SAMN04488128_1011587 | Hypothetical protein. | Hypothetical protein. | 0.536 |
SJZ78583.1 | SJZ43473.1 | SAMN04488128_1011587 | SAMN04488128_101206 | Hypothetical protein. | Outer membrane receptor proteins, mostly Fe transport. | 0.466 |
SJZ78583.1 | SJZ47596.1 | SAMN04488128_1011587 | SAMN04488128_101382 | Hypothetical protein. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.484 |
SJZ78583.1 | SJZ54000.1 | SAMN04488128_1011587 | SAMN04488128_101641 | Hypothetical protein. | TonB-dependent receptor. | 0.403 |
SJZ78583.1 | SJZ78565.1 | SAMN04488128_1011587 | SAMN04488128_1011586 | Hypothetical protein. | Hypothetical protein. | 0.536 |
SJZ78583.1 | SJZ95209.1 | SAMN04488128_1011587 | SAMN04488128_10213 | Hypothetical protein. | TonB-dependent receptor. | 0.465 |
SJZ78583.1 | SJZ99321.1 | SAMN04488128_1011587 | SAMN04488128_102193 | Hypothetical protein. | Rhodanese-related sulfurtransferase. | 0.414 |
SJZ78583.1 | SKA41959.1 | SAMN04488128_1011587 | SAMN04488128_105557 | Hypothetical protein. | Carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily. | 0.413 |
SJZ78583.1 | SKA45894.1 | SAMN04488128_1011587 | SAMN04488128_107137 | Hypothetical protein. | Cystathionine beta-synthase. | 0.450 |
SJZ78583.1 | rplW | SAMN04488128_1011587 | SAMN04488128_101266 | Hypothetical protein. | Large subunit ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.405 |
SJZ78583.1 | rplX | SAMN04488128_1011587 | SAMN04488128_101275 | Hypothetical protein. | Large subunit ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.405 |
SJZ95209.1 | SJZ78583.1 | SAMN04488128_10213 | SAMN04488128_1011587 | TonB-dependent receptor. | Hypothetical protein. | 0.465 |
SJZ99321.1 | SJZ78583.1 | SAMN04488128_102193 | SAMN04488128_1011587 | Rhodanese-related sulfurtransferase. | Hypothetical protein. | 0.414 |
SJZ99321.1 | SKA45894.1 | SAMN04488128_102193 | SAMN04488128_107137 | Rhodanese-related sulfurtransferase. | Cystathionine beta-synthase. | 0.814 |
SJZ99321.1 | rplX | SAMN04488128_102193 | SAMN04488128_101275 | Rhodanese-related sulfurtransferase. | Large subunit ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.707 |
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