STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ40917.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (200 aa)    
Predicted Functional Partners:
SKA13942.1
PAS domain S-box-containing protein.
   
 0.984
SJZ68738.1
PAS domain S-box-containing protein.
   
 0.980
SKA31422.1
Hpt domain-containing protein.
   
 0.980
SKA23098.1
Signal transduction histidine kinase.
  
 0.948
SKA38415.1
Signal transduction histidine kinase.
  
 0.928
SKA43420.1
Signal transduction histidine kinase.
  
 0.928
SKA44102.1
PAS domain S-box-containing protein.
  
 0.888
SKA32797.1
Signal transduction histidine kinase.
  
  0.864
SKA37801.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.862
SJZ84648.1
Protein of unknown function.
 
  0.861
Your Current Organism:
Chitinophaga eiseniae
NCBI taxonomy Id: 634771
Other names: C. eiseniae, Chitinophaga eiseniae Yasir et al. 2011, Chitinophaga sp. YC6729, DSM 22224, KACC 13774, strain YC6729
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